PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08384A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LSD
Protein Properties Length: 141aa    MW: 14511.4 Da    PI: 9.3495
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08384AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD149.56.7e-164770124
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                               Cg+Crt+L+YP+GApsV+Ca+C+ 
  Oropetium_20150105_08384A 47 CGHCRTTLMYPYGAPSVKCAICNY 70
                               **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.1E-134472IPR005735Zinc finger, LSD1-type
PfamPF069439.7E-154771IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPRVPDRPAL PARGAQRLLR GVPSHHHCPT ASDFHFGAVN NVAHVNCGHC RTTLMYPYGA  60
PSVKCAICNY ITATINAVTP TPSTTAPSNG SSYSASSTSA PKTQPQNVTV VVENPMTVDE  120
KGKLVSSVVV GVTAGSAGKN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464188.12e-48hypothetical protein SORBIDRAFT_01g013820
SwissprotQ6ASS28e-42LOL3_ORYSJ; Protein LOL3
TrEMBLC5WR973e-48C5WR97_SORBI; Putative uncharacterized protein Sb01g013820
STRINGSb01g013820.17e-48(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.66e-17LSD family protein